Jupyter Notebooks

Jupyter Notebooks are documents which can contain live (Python) code, equations, visualizations and narrative text and can be used as an intuitive interface for OGS projects. The following video gives an introduction to using OpenGeoSys with Jupyter Notebooks:

Jupyter Notebooks container environments

You can start with pre-defined container environment from one of the images

Usage

With Docker:

docker run --rm -p 8888:8888 -v $PWD:/home/jovyan/work --user `id -u $USER` \
    --group-add users quay.io/jupyter/scipy-notebook

This mounts your current directory into ~/work inside the container.

With Singularity:

singularity run docker://quay.io/jupyter/scipy-notebook

Open the specified URL shown in the command output in your browser, e.g.

http://127.0.0.1:8888/lab?token=xxx

You may have to modify the IP address if this is running on a remote machine.

Install ogs

Click on Terminal and install OGSTools (which also installs ogs itself):

pip install ogstools

You install other Python packages too. Please note that this is a temporary installation. If you stop the container the manually installed packages will be deleted.